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Sirish Kaushik Lakkaraju, Wenbo Yu, E Prabhu Raman, Alexander D MacKerell, "Mapping Functional Group Requirements of Ligands at the Occluded Binding pocket of Beta2-Adrenergic G-Protein Coupled Receptor using Site-Identificaiton by Ligand Competitive Saturation Simulations", Biophysical Society, 2015. (poster)
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Wenbo Yu, E Prabhu Raman, Sirish Kaushik Lakkaraju, Lei Fang, Alexander D MacKerell, "Pharmacophore modeling using Site-Identification by Ligand Competitive Saturation with multiple probe molecules", Biophysical Society, 2015. (platform)
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Meagan C Small, Sirish Kaushik Lakkaraju, E Prabhu Raman, Rodrigo B Andrade, Alexander D MacKerell, "Molecular understanding of the binding of macrolide antibiotics to the Ribosome using Site-Identification by Ligand Competitive Saturation", Biophysical Society, 2015. (poster)
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Rachita Rai, Fengtian Xue, Alexander D MacKerell, Sirish Kaushik Lakkaraju, "Synthesis and Evaluation of Protein Tyrosine Phosphatase inhibitors by targeting a novel allosteric site", American Chemical Society Fall National Meeting, 2014. (poster)
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Alexander D MacKerell, E Prabhu Raman, Wenbo Yu, Sirish Kaushik Lakkaraju, Olgun Guvench, " Site Identification by Ligand Competitive Saturation (SILCS): Mapping fragment binding sites including consideration of protein flexibility and fragment desolvation using explicit solvent representation", American Chemical Society Spring National Meeting, 2013. (platform)
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Sirish Kaushik Lakkaraju, Ashley R McDonald, Alexander D MacKerell, "Quantum Mechanical/Molecular Mechanical simulations: An efficient strategy to calculate vibrational stark shift", American Chemical Society Fall National Meeting, 2012. (poster)
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Sirish Kaushik Lakkaraju, Wonmuk Hwang, "Mechanical coupling of the motor protein Ncd in the microtubule minus-end directed motion", Biomedical Engineering Society National Meeting, 2011. (platform)
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Sirish Kaushik Lakkaraju, Wonmuk Hwang, "Atomistic basis for the directionality and cooperativity of the Ncd motor", The 1st KIAS Conference on Subcellular Dynamics: Emergent behaviors of the mechanical elements in the cell, 2011. (platform)
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Sirish Kaushik Lakkaraju, Wonmuk Hwang, "Role of non-specific attractions in conformational behavior of biofilaments: A case study of α--helices and coiled-coils", Sixth World Congress on Biomechanics, 2010. (platform)
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Sirish Kaushik Lakkaraju, Wonmuk Hwang, "Possible intermediate states in the microtubule minus-end directed movement of the Ncd stalk", Biophysical Society, 2010. (platform)
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Sirish Kaushik Lakkaraju, Wonmuk Hwang, "Transition Pathway of the minus end directed movement of Kinesin-14 Ncd", ASME First Congress of Nanotechnology in Medicine and Biology, 2010. (platform)
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Sirish Kaushik Lakkaraju, Wonmuk Hwang, "Length and sequence dependence of elasticity of α-helices and coiled-coils", ASME Summer Bioconference, 2009. (poster)
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Sirish Kaushik Lakkaraju, Wonmuk Hwang, "Regional variations in flexibilities limit continuum rod description of long coiled-coils" Biophysical Society, 2009. (poster)
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Sirish Kaushik Lakkaraju, Wonmuk Hwang, "Limits in application of linear elasticity theory in characterization of α-helices and filamentous proteins", Biophysical Society, 2008. (poster)
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Sirish Kaushik Lakkaraju, Wonmuk Hwang, "Breakdown of linear elasticity in α-helices", Society of Engineering Science, 2007. (platform)
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Sirish Kaushik Lakkaraju, Wonmuk Hwang, "Molecular mechanics of α-helices", Cardiovascular Research Institute, 2006. (poster, 3rd prize)
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Sirish Kaushik Lakkaraju, Anant Joshi, "Supporting mobility using CAMEL-Location Based Services, a case study", Avionics and Communication Engineering, 2004. (platform)
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